PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc08964.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 21443.7 Da PI: 5.318 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.1e-21 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Zpz_sc08964.1.g00010.1.sm.mk 23 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 72 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.99E-30 | 22 | 82 | No hit | No description |
SuperFamily | SSF54171 | 2.48E-23 | 23 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-33 | 23 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 23 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-15 | 24 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
PASGAGSGST AAASAHPPRP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA 60 LAYDQAAYRL RGDAARLNFP DNAASRAPLE PAVDAKLQTI CATIAAASSS SKGKGRVGAV 120 PINMAPQAQP MSPSRSSSDE GSGSGSSDDD EAASSAAAAV AAVAPLAEMG QLDFSEVPWD 180 EAESFVLRKY PSYEIDWDAL LGSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 22 | 80 | 4 | 63 | ATERF1 |
3gcc_A | 8e-21 | 22 | 80 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc08964.1.g00010.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP742345 | 1e-106 | KP742345.1 Saccharum spontaneum NAC1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820073.1 | 7e-89 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 1e-52 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0A9FEZ5 | 1e-90 | A0A0A9FEZ5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Fa01600.1.p | 3e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-35 | related to AP2 4 |
Publications ? help Back to Top | |||
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