PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc07748.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 286aa    MW: 31601 Da    PI: 10.6999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc07748.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.48.1e-19175222148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
  Zpz_sc07748.1.g00010.1.am.mk 175 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 222
                                   79********************************************97 PP
2Myb_DNA-binding54.92.1e-17228273148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Zpz_sc07748.1.g00010.1.am.mk 228 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 273
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-25167225IPR009057Homeodomain-like
PROSITE profilePS5129418.639170222IPR017930Myb domain
SuperFamilySSF466891.72E-30172269IPR009057Homeodomain-like
SMARTSM007171.6E-15174224IPR001005SANT/Myb domain
PfamPF002496.0E-17175222IPR001005SANT/Myb domain
CDDcd001671.26E-12177222No hitNo description
PROSITE profilePS5129426.333223277IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-26226277IPR009057Homeodomain-like
SMARTSM007175.8E-17227275IPR001005SANT/Myb domain
PfamPF002491.4E-16228273IPR001005SANT/Myb domain
CDDcd001671.57E-12230273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQSNLLLPEN TSVWSCNSAY PRTPSRACVR FQDSSSKAAC DTNPGTADRI VEAHEDAAGR  60
YDCGRAVTRA VARRVPVAHQ TLSPSAGRGG GLVRRGTFVP GRRAPLRLGA ADGDGAARSP  120
LQFRAVLRSY RAADVWDTSE LLRPATLPSS HSAITGLSAR MGRSPCCEKE AGLKKGPWTP  180
EEDQKLLAYI EQHGHGCWRS LPAKAGLRRC GKSCRLRWTN YLRPDIKRGK FTLQEEQTII  240
QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLARM GIDPVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-281732775108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc07748.1.g00010.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794241e-165HF679424.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB18 protein.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-84myb domain protein 16