PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc07730.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 120aa    MW: 14499.5 Da    PI: 9.9289
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc07730.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.41.6e-10661012055
                                   HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Zpz_sc07730.1.g00010.1.am.mk  66 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 101
                                   5679*****************************985 PP
2ELK39.98.9e-142142122
                           ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                  ELK qLl+KYsgyL+sL+qEFs
  Zpz_sc07730.1.g00010.1.am.mk 21 ELKYQLLKKYSGYLSSLRQEFS 42
                                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011881.2E-72142IPR005539ELK domain
PROSITE profilePS5121311.6272141IPR005539ELK domain
PfamPF037899.5E-112142IPR005539ELK domain
PROSITE profilePS5007112.89241104IPR001356Homeobox domain
SuperFamilySSF466891.41E-2042115IPR009057Homeodomain-like
SMARTSM003894.4E-1343108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-2946105IPR009057Homeodomain-like
CDDcd000868.01E-1153105No hitNo description
PfamPF059201.6E-1761100IPR008422Homeobox KN domain
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MDTTGRENET SEIDPRAEDK ELKYQLLKKY SGYLSSLRQE FSKKKKKGKL PKEARQKLLH  60
WWELHYKWPY PSETEKIALA ESTGLDQKQI NNWFINQRKR HWKPSEDMPF VMMEGFHPQT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc07730.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940391e-145FP094039.1 Phyllostachys edulis cDNA clone: bphyem209e11, full insert sequence.
GenBankFP1014691e-145FP101469.1 Phyllostachys edulis cDNA clone: bphyst005d10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149651.14e-72homeobox protein rough sheath 1
RefseqXP_020403337.14e-72homeobox protein rough sheath 1 isoform X1
SwissprotO650349e-72KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804169e-72KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A3L6PCB72e-71A0A3L6PCB7_PANMI; Homeobox protein rough sheath 1-like (Fragment)
TrEMBLM8BNC52e-71M8BNC5_AEGTA; Homeobox protein knotted-1-like 12
STRINGEMT234543e-72(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-46KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]