PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc07122.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 26299.7 Da PI: 5.9184 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5e-18 | 2 | 50 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Zpz_sc07122.1.g00010.1.am.mk 2 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 50 56******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.29E-26 | 1 | 57 | No hit | No description |
PROSITE profile | PS51032 | 20.547 | 1 | 58 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-30 | 1 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-20 | 2 | 59 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-28 | 2 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-8 | 2 | 13 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 4 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-8 | 24 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
RFLGVRRRPW GRYAAEIRDP TTKERHWLGT FDTAQEAALA YDRAALSMKG AQARTNFVYS 60 HTAYNYPPFL APFHAQPSYG YAQSSMHQYG GQHGMGASSH IGSYHPHYQA PAGSGASSAS 120 GECSMPVAVD RADGSLLDGG HNFLFSSADD NSGYLSSVVP ESCLRPRSSA AAAEDMRRYS 180 DADAYGMMGL REDVDDLAQM VAGFWGDAGD AEQLGACAFP AGGGHGGDIV SSSQGSDAYS 240 PFSFLSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 2 | 57 | 6 | 62 | ATERF1 |
3gcc_A | 2e-17 | 2 | 57 | 6 | 62 | ATERF1 |
5wx9_A | 2e-17 | 1 | 62 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc07122.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036365 | 1e-101 | BT036365.1 Zea mays full-length cDNA clone ZM_BFb0108M21 mRNA, complete cds. | |||
GenBank | KJ727547 | 1e-101 | KJ727547.1 Zea mays clone pUT5407 AP2-EREBP transcription factor (EREB151) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804267.1 | 1e-120 | ethylene-responsive transcription factor FZP | ||||
Swissprot | Q8H3Q1 | 1e-112 | FZP_ORYSJ; Ethylene-responsive transcription factor FZP | ||||
TrEMBL | A0A1E5UMV0 | 1e-123 | A0A1E5UMV0_9POAL; Ethylene-responsive transcription factor ERF086 | ||||
STRING | Pavir.Ba00192.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10525 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 3e-41 | ERF family protein |