PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc07037.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 35602.2 Da PI: 9.2715 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.1 | 4.5e-42 | 59 | 190 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknra 77 ppGfrF Pt+eel+ +yL+++++g++ ++e++i+ vdiy+++P+dL++ + + + ++w+fF++r++++ +g r+ r+ Zpz_sc07037.1.g00010.1.am.mk 59 PPGFRFYPTEEELLGFYLRQRLAGTRPDVERFIPVVDIYSYHPRDLQSmagaA-NVsDPEQWFFFCPRAERELHGGRPART 138 9****************************999**************9434432.222556********************* PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 t sgyWkatg+ v+s+ ++++g k+t+vfy+grap+g+kt+W m+ey++ Zpz_sc07037.1.g00010.1.am.mk 139 TPSGYWKATGSPSWVFSSsANRVIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 190 ****************9867788***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-47 | 56 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.134 | 58 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-22 | 59 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDAPTSAMAV QRMQLLQNFF TLLWELLSRH QHHRPLYKYV QGMRLNMETT GGGVDPIFPP 60 GFRFYPTEEE LLGFYLRQRL AGTRPDVERF IPVVDIYSYH PRDLQSMAGA ANVSDPEQWF 120 FFCPRAEREL HGGRPARTTP SGYWKATGSP SWVFSSSANR VIGEKRTMVF YQGRAPTGTK 180 TRWKMNEYKA VADPAVTVAV VPPRLRNEFS VCRVYISTGT LRSFDRRPLN HADIHHHHQL 240 VLPPPAANTG STQPFGGDVV ANGNGQTETS RDSSSFGSRG MVVDGENAID WDSLMIPLAD 300 DGLSFSADGL ARALVRAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-28 | 54 | 215 | 9 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-28 | 54 | 215 | 9 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-28 | 54 | 215 | 9 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-28 | 54 | 215 | 9 | 163 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-28 | 54 | 215 | 9 | 163 | NAC domain-containing protein 19 |
4dul_B | 2e-28 | 54 | 215 | 9 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc07037.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978711.1 | 1e-113 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 3e-65 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | K3ZJF4 | 1e-112 | K3ZJF4_SETIT; Uncharacterized protein | ||||
STRING | Si026707m | 1e-113 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-63 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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