PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc07037.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 318aa    MW: 35602.2 Da    PI: 9.2715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc07037.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.14.5e-42591902128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknra 77 
                                   ppGfrF Pt+eel+ +yL+++++g++ ++e++i+ vdiy+++P+dL++    + +  + ++w+fF++r++++ +g r+ r+
  Zpz_sc07037.1.g00010.1.am.mk  59 PPGFRFYPTEEELLGFYLRQRLAGTRPDVERFIPVVDIYSYHPRDLQSmagaA-NVsDPEQWFFFCPRAERELHGGRPART 138
                                   9****************************999**************9434432.222556********************* PP

                           NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   t sgyWkatg+   v+s+  ++++g k+t+vfy+grap+g+kt+W m+ey++
  Zpz_sc07037.1.g00010.1.am.mk 139 TPSGYWKATGSPSWVFSSsANRVIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 190
                                   ****************9867788***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-4756216IPR003441NAC domain
PROSITE profilePS5100548.13458217IPR003441NAC domain
PfamPF023651.3E-2259189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDAPTSAMAV QRMQLLQNFF TLLWELLSRH QHHRPLYKYV QGMRLNMETT GGGVDPIFPP  60
GFRFYPTEEE LLGFYLRQRL AGTRPDVERF IPVVDIYSYH PRDLQSMAGA ANVSDPEQWF  120
FFCPRAEREL HGGRPARTTP SGYWKATGSP SWVFSSSANR VIGEKRTMVF YQGRAPTGTK  180
TRWKMNEYKA VADPAVTVAV VPPRLRNEFS VCRVYISTGT LRSFDRRPLN HADIHHHHQL  240
VLPPPAANTG STQPFGGDVV ANGNGQTETS RDSSSFGSRG MVVDGENAID WDSLMIPLAD  300
DGLSFSADGL ARALVRAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-28542159163NO APICAL MERISTEM PROTEIN
1ut4_B2e-28542159163NO APICAL MERISTEM PROTEIN
1ut7_A2e-28542159163NO APICAL MERISTEM PROTEIN
1ut7_B2e-28542159163NO APICAL MERISTEM PROTEIN
4dul_A2e-28542159163NAC domain-containing protein 19
4dul_B2e-28542159163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc07037.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978711.11e-113NAC domain-containing protein 90
SwissprotQ9FMR33e-65NAC90_ARATH; NAC domain-containing protein 90
TrEMBLK3ZJF41e-112K3ZJF4_SETIT; Uncharacterized protein
STRINGSi026707m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-63NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]