PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc06910.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 256aa MW: 26984.4 Da PI: 9.4691 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.4 | 7.8e-32 | 1 | 110 | 2 | 102 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.... 73 ag+kdrhsk+ T++g+RdRRvRls+++a+rf+d+qd+LG+d++sk++ WL+ +a +ai++l+++ Zpz_sc06910.1.g00010.1.am.mk 1 AGGKDRHSKVVTARGLRDRRVRLSVPTAIRFYDVQDRLGVDQPSKAVAWLIGAAAAAIDALPSLdrssfA------Lppav 75 689*************************************************************544431......12333 PP TCP 74 .eaesssssasnsssg.....kaaksaakskksqk 102 +a++++s++++s+ + +a +++a + +++ Zpz_sc06910.1.g00010.1.am.mk 76 aDAGAEVSASETSKGSvlslvNAPAETAVPAAAHQ 110 33333333333333335555422222221111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-31 | 2 | 111 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.594 | 3 | 61 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
AGGKDRHSKV VTARGLRDRR VRLSVPTAIR FYDVQDRLGV DQPSKAVAWL IGAAAAAIDA 60 LPSLDRSSFA LPPAVADAGA EVSASETSKG SVLSLVNAPA ETAVPAAAHQ TNHAVHAYSG 120 NAGGGGAFAQ PLHCDATDDD KSMRQKGPPT LAYYAAQTRS PYITPARDLG TMPQLAFLHE 180 EQQQQPAVVF GRAILQSNAV AAPLWPPAQQ HPCLLQRFTS ADAAGLPFFL GGGAAPVTSS 240 ADRRVQFWNF KQERKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 8 | 62 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 8 | 62 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc06910.1.g00010.1.am.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101215 | 1e-60 | FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963209.1 | 2e-92 | transcription factor PCF8 | ||||
Swissprot | A2ZMR9 | 3e-64 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | A0A3L6T289 | 6e-93 | A0A3L6T289_PANMI; Transcription factor PCF8 | ||||
STRING | Pavir.Ca02949.1.p | 8e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 3e-20 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |