PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc06827.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 333aa MW: 34142.8 Da PI: 9.9599 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.9 | 1.5e-41 | 8 | 181 | 1 | 135 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +s Zpz_sc06827.1.g00020.1.am.mk 8 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRS 88 689*******************************************************************99987888888 PP TCP 81 sasnsssg....................................kaaksaakskksqksaasalnlakesrakarar..ar 123 s+s+ s + ++++s + + +s + l+++ + +a a a +r Zpz_sc06827.1.g00020.1.am.mk 89 SGSSFSVPahlraalpspsaaarfgradawervvglgfpseglaSSSSSPSPLLLNFHSGSVGLDVQPSPSAAATAAdlSR 169 888655557778888888888999999999999999999999965555555888888888888888887776666664455 PP TCP 124 ertrekmriknk 135 +r e+ ++++ Zpz_sc06827.1.g00020.1.am.mk 170 KRRLEQEIQQQQ 181 544333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.7E-42 | 14 | 184 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.861 | 15 | 69 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
DEVQVRKAAP KRSSTKDRHT KVEGRGRRIR MPALCAARVF QLTRELGHKT DGETIEWLLQ 60 QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSFSVPAHLR AALPSPSAAA RFGRADAWER 120 VVGLGFPSEG LASSSSSPSP LLLNFHSGSV GLDVQPSPSA AATAADLSRK RRLEQEIQQQ 180 QQQQMAGYTQ SQMPGTVWMV PSNNTQGGTP SGGGGTGGGS GESIWTFPQM SSAAAAAAMY 240 RGSVPSGLHF MNFPAPMALL QGQQLGLGSV GSSGGGSGGE GHMGILAALS AYRTQTATDS 300 AAAQGDGGGG GSAQQQHGGG RGERHESMST SDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc06827.1.g00020.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084392 | 1e-159 | BT084392.2 Zea mays full-length cDNA clone ZM_BFb0108G19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825808.1 | 1e-136 | transcription factor TCP14-like | ||||
Swissprot | Q93Z00 | 1e-61 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A0E0K584 | 1e-136 | A0A0E0K584_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G29990.1 | 1e-136 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 4e-44 | TCP family protein |
Publications ? help Back to Top | |||
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