PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc06723.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 25669.3 Da PI: 7.2193 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 1 | 22 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W+ Ia+ ++ gRt++++k++w++ Zpz_sc06723.1.g00010.1.am.mk 1 WSIIAAQLP-GRTDNDIKNYWNT 22 99*******.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.35E-5 | 1 | 24 | No hit | No description |
SuperFamily | SSF46689 | 2.12E-6 | 1 | 29 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 1 | 28 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.703 | 1 | 28 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
WSIIAAQLPG RTDNDIKNYW NTKLKKKLML AHGLQPPTTT NTNSHHHRPK KQQQLFFSAQ 60 AEAPSSATQP PGEPLSLQYL STPFHNFSYH YGSRCYDSNT PTSHHSAGSG GSLLMLGGSN 120 DEQHMISSPC FPNYGSLHGH DSAAVAASLA MESFVFQDDH HKALQVLLAS GTASLDHQNG 180 TNMSCGYEET AKPLLVNVTA GGGGSNWVSN SFFCSYSEEK SSSSPNAAGV SRQGSFMY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc06723.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-13 | myb domain protein 36 |