PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc06712.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 8633.28 Da PI: 7.5269 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.9 | 8.4e-12 | 2 | 42 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +W+t E e++ +a + +G++ W+++a+ +g g+t +++ ++ Zpz_sc06712.1.g00020.1.am.mk 2 SWSTSENERFERALATYGSD-WERVAAAVGGGKTVDDVRRHY 42 7*******************.********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 4.6E-10 | 1 | 42 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.956 | 1 | 50 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-6 | 2 | 43 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-4 | 2 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-7 | 2 | 42 | No hit | No description |
SuperFamily | SSF46689 | 9.72E-12 | 2 | 51 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MSWSTSENER FERALATYGS DWERVAAAVG GGKTVDDVRR HYALLVEDVG SIESGGYGYP 60 NGSAGNGNRN NRGRANRPQA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc06712.1.g00020.1.am.mk |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024313364.1 | 2e-30 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 2e-16 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
Swissprot | Q6NNN0 | 1e-16 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | I1H7D6 | 4e-29 | I1H7D6_BRADI; Uncharacterized protein | ||||
STRING | MLOC_69872.1 | 2e-32 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-17 | RAD-like 1 |
Publications ? help Back to Top | |||
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