PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc06462.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 140aa MW: 15550 Da PI: 9.7857 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.5 | 2e-07 | 2 | 41 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P++ sk Ka +L + ++Y++sLq Zpz_sc06462.1.g00010.1.sm.mk 2 RREKISERMKLLQDLVPSC----SKVTGKAVMLDEIINYVQSLQ 41 9*****************9....566*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00353 | 3.1E-4 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.659 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-8 | 2 | 45 | No hit | No description |
Pfam | PF00010 | 1.4E-4 | 2 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-11 | 2 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-12 | 3 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
LRREKISERM KLLQDLVPSC SKVTGKAVML DEIINYVQSL QRQVEILRFP GVPSSSFGFS 60 PDMMHPQLQL SQPGLMQGGA AGMANPDVFR RIMQAQLNAK DRSQMAHAMN GSFSDVTQMA 120 YPSLGSQDLS MRPSQNGFQM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc06462.1.g00010.1.sm.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121418 | 5e-40 | AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence. | |||
GenBank | HQ858863 | 5e-40 | HQ858863.1 Oryza sativa Japonica Group isolate UT1672 bHLH- transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021308861.1 | 3e-80 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_021308862.1 | 3e-80 | transcription factor bHLH49 isoform X2 | ||||
TrEMBL | J3MYF4 | 6e-80 | J3MYF4_ORYBR; Uncharacterized protein | ||||
STRING | OB09G20330.1 | 1e-80 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2909 | 37 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 8e-24 | bHLH family protein |