PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc06353.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 226aa MW: 25172.3 Da PI: 6.6904 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 1.9e-18 | 49 | 137 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 ffkv+ p+ +++ l +p +f e ++ ++ + ++l+ +sg sW+v l + +s++ v+t+GWkeF++++ L g f++ Zpz_sc06353.1.g00010.1.am.mk 49 FFKVFFPEQSGEG--LKIPSPFHEYVEEAPN--RVVSLRGPSGHSWRVVL--TTGSQGLVFTQGWKEFARDHSLIPGHFLL 123 8999988887765..9******954465544..48***************..***************************** PP EEE-SSSEE..EEEEE CS B3 82 Fkldgrsefelvvkvf 97 F++dg sef v vf Zpz_sc06353.1.g00010.1.am.mk 124 FTYDGCSEF--SVAVF 137 ***986776..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-22 | 47 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-20 | 48 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-13 | 49 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 49 | 136 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.45E-17 | 49 | 137 | No hit | No description |
PROSITE profile | PS50863 | 12.957 | 62 | 140 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MRNGMGKEKE KQVEKGRDRR KEKQSGKEQR KEIAREVQDD VPVAAGEQFF KVFFPEQSGE 60 GLKIPSPFHE YVEEAPNRVV SLRGPSGHSW RVVLTTGSQG LVFTQGWKEF ARDHSLIPGH 120 FLLFTYDGCS EFSVAVFTPL GVEDKAALKV QPCKELLVKQ EEEEGTLDVA ADGTLEASDT 180 PFVEGNGATT GKRVRDMDYE MTSGTAQKRH SSVQEKPKKK KPEATA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc06353.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827675.1 | 5e-57 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_025827676.1 | 5e-57 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A0A9DCS3 | 3e-60 | A0A0A9DCS3_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J06349.1.p | 4e-55 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 1e-17 | B3 family protein |