PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05816.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 536aa    MW: 57594.4 Da    PI: 7.4829
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05816.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18451485135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+C ttkTp+WR gp+g+ tLCnaCGl+y  kg+
  Zpz_sc05816.1.g00010.1.am.mk 451 CSHCSTTKTPQWRAGPRGPGTLCNACGLRYTDKGS 485
                                   ******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-17445500IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.123445484IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15447507No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15449484IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.02E-19450507No hitNo description
PROSITE patternPS003440451476IPR000679Zinc finger, GATA-type
PfamPF003202.6E-16451485IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MVPQQTDEPR RRLSWKAGPA VTPHAGPATH DDFRTLPLQV AAARMVFLSR APLLLLRGTQ  60
LTKAVRIRVI RLGVVPPANF DDAHDYLDDD DVPVLPLQRK RGHRRYPCQP RGRLARGGLS  120
CPDDELNKVV PVEYFDFDKF PADNTPDDVL GLDGSALSET SGHAAPTSAL PTASDSAGPC  180
PVLDGAAATG FVPPFPQPGL VDVLDIDSSP PLPDELSCLV ATFFEPSWPA QHTLYGVIPD  240
LAPPLPPGLV DVLDIDSSPP LPDELSCLVA TFFEPSWPAQ HTLYGVIPDL APPLPVQDSE  300
SLNCSIATCT VPLFPALDVA SRSAPLLPAQ HAAAGAVVPD TAPPLRAHDT VPSAGPPATC  360
STSSGCMSSM PWEHESAPSV VPSPIAATSV VPRKQRHRSV TRRNPTWLPK SQFYEKPPAA  420
PRAAPSSLKA GGNDKPLVAK RRRNRERDRV CSHCSTTKTP QWRAGPRGPG TLCNACGLRY  480
TDKGSLLETY RPTTSPSFDS GKHSNRQSKA AKIMEKAELA KVMDDTYRRR LSESSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05816.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2069137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.11e-19GATA transcription factor 14