PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc05676.1.g00030.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 550aa MW: 59543.7 Da PI: 5.1447

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc05676.1.g00030.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85	7e-27	312	361	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sle+l++yFs+ +kdAA++Lgvc+T++KriCRq+GI+RWP+R+i++ Zpz_sc05676.1.g00030.1.am.mk 312 EKTVSLEELQRYFSGRMKDAARSLGVCPTTMKRICRQHGISRWPFRQIAK 361 799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	298	382	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-24	314	361	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-18	440	512	No hit	No description
SMART	SM00666	5.0E-16	445	538	IPR000270	PB1 domain
PROSITE profile	PS51745	15.642	445	538	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.6E-20	446	512	No hit	No description
Pfam	PF00564	1.3E-12	446	515	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MEYHFLTSQV CSDEAAEQAM SEVSGVLTTV CEAHQLPLAQ AWVRCKRCNS TSMEHAFLTT 60 AGAPFHLSGD EGVRGFREAC VEQHLREGRG GLVEGAATAR GPRFCADVTK YSMDEYPLAH 120 HARFSGLAGC LAVCVELRRD AGGEGGREEC VLEFFLPPDC SDGQAQKAAV EAVAATIREC 180 FGNGDLKAIA LCGSQDLAFE IVADDECVLR PYRAIMADAP DPELQLENHG RYAPDHTIMA 240 DTPDPELQLD NHGGYVRDSD DEDVHLSAAI RGADVDAPEM KNDEQKEGED PEPQDGNSRT 300 RRKKKVGKRK NEKTVSLEEL QRYFSGRMKD AARSLGVCPT TMKRICRQHG ISRWPFRQIA 360 KANNSLDKVK RIFESVQYSP QPMAAPAASQ QAPALATAHG PPAALPCLSN AHGVASSQGS 420 CQEPPPPRKR SITRKPFHAG DTEGLVTVKA SYRGDIVRFR VPSFAGVEAV KGEVAKRLGL 480 EMDAFDLKYL DDDNECVLLS CDADFQECLE VFPALSTASS SSGSGAAQPV VRLMVQEVAD 540 NHGSSCASSD

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MEYHFLTSQV CSDEAAEQAM SEVSGVLTTV CEAHQLPLAQ AWVRCKRCNS TSMEHAFLTT  60
AGAPFHLSGD EGVRGFREAC VEQHLREGRG GLVEGAATAR GPRFCADVTK YSMDEYPLAH  120
HARFSGLAGC LAVCVELRRD AGGEGGREEC VLEFFLPPDC SDGQAQKAAV EAVAATIREC  180
FGNGDLKAIA LCGSQDLAFE IVADDECVLR PYRAIMADAP DPELQLENHG RYAPDHTIMA  240
DTPDPELQLD NHGGYVRDSD DEDVHLSAAI RGADVDAPEM KNDEQKEGED PEPQDGNSRT  300
RRKKKVGKRK NEKTVSLEEL QRYFSGRMKD AARSLGVCPT TMKRICRQHG ISRWPFRQIA  360
KANNSLDKVK RIFESVQYSP QPMAAPAASQ QAPALATAHG PPAALPCLSN AHGVASSQGS  420
CQEPPPPRKR SITRKPFHAG DTEGLVTVKA SYRGDIVRFR VPSFAGVEAV KGEVAKRLGL  480
EMDAFDLKYL DDDNECVLLS CDADFQECLE VFPALSTASS SSGSGAAQPV VRLMVQEVAD  540
NHGSSCASSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc05676.1.g00030.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823617.1	0.0	protein NLP3-like
TrEMBL	A0A2S3GLE7	0.0	A0A2S3GLE7_9POAL; Uncharacterized protein
TrEMBL	A0A3L6QJT0	0.0	A0A3L6QJT0_PANMI; Uncharacterized protein
STRING	Pavir.Aa03213.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	4e-74	Nin-like family protein