PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05558.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 532aa    MW: 57841.8 Da    PI: 11.0393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05558.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.45.3e-27326379254
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg 54 
                                    D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe 
  Zpz_sc05558.1.g00010.1.am.mk 326 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEA 379
                                   69*************************988**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.9E-13281323IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.2E-29313379IPR003657WRKY domain
PROSITE profilePS5081126.268320379IPR003657WRKY domain
SuperFamilySSF1182908.5E-23323378IPR003657WRKY domain
SMARTSM007742.8E-30325382IPR003657WRKY domain
PfamPF031061.3E-22327379IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEPSSVEGME EANRAAVQSC HRVLALLSNP HGHLVSNKDL AAATGEAVSK FGSLTSRLAS  60
GDGHQGHAKV RNVKRPLPII DSNLFLESPA VAAAAAARTP RPGPSTSLQL FSRYQQQQGE  120
GSGSSSKEPV RIPAHFPKRL LLDNPAVDAL PIKLVQPVSV APPAGPPHPA LPAAHLQFIQ  180
QHQSYQRYQF MQQMQIQSEM MKRSSLGDQG HQGGSGGAAG GKGVNLKFDS SNCTASSSRS  240
FLSSLSLEGS LASLDGSRAS RPFQLVSGSQ TSSNPEPSVQ RRKCTGREDG SGRCATRCHC  300
AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR  360
KHVERCVDDP SMLIVTYEAS SLTLSWWPPF LPAARRRETL KKKKRSVPAR RRQVRLPHHH  420
YESSFPNPIP NSPSLQPQAH TLDAATSAHA VATRPAPRRS SVLRPNAASC APTSSTRGAR  480
HLHSVPLERP YVYAACEFFT APQLRMDSSN GARQSKVILL NLRHTFITSL MI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-153233791267WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05558.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG41e-168WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0D6P50.0A0A0E0D6P5_9ORYZ; Uncharacterized protein
STRINGOMERI03G30220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-43WRKY DNA-binding protein 21