PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05217.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 378aa    MW: 41054.6 Da    PI: 9.8483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05217.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-20115163254
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                                    y+GVr++  +g+WvAeIr+p   +kr+r++lg+f taeeAa a+++a++kl+
  Zpz_sc05217.1.g00020.1.am.mk 115 EYRGVRQRT-WGKWVAEIREP---NKRTRVWLGSFATAEEAALAYDEAARKLY 163
                                   69****999.**********9...337***********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.93E-27114174No hitNo description
SuperFamilySSF541711.7E-20115173IPR016177DNA-binding domain
PROSITE profilePS5103221.641115172IPR001471AP2/ERF domain
PfamPF008471.2E-13115162IPR001471AP2/ERF domain
SMARTSM003806.9E-34115178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-29115173IPR001471AP2/ERF domain
PRINTSPR003672.3E-10116127IPR001471AP2/ERF domain
PRINTSPR003672.3E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDTCVEEKLV KGSAREEQQC YARSLITCCC LRELTLTGLR DPCITLLRTP LLRDPAPPHT  60
LLAQSATLVD LTIRGRFKKI RASKKQQGME SLGQKRGWKK GPTREKSGPQ NAACEYRGVR  120
QRTWGKWVAE IREPNKRTRV WLGSFATAEE AALAYDEAAR KLYDPGAFLN LPHLRASVSV  180
SAAAAHQRFS LSGGSRPPTG AAPSPRSRLT GSSTSMRSTM FTSSIRGCRR SRTARRHRLP  240
SRRRARELHT SSCHSSAAAV NVVLPGPGAG GVTATMTSDT ARCEFDGTGA DKPQLDLREF  300
LQQIGVLKGE EEGTVTKNGD VAGALGNGEF DWNALAADLN DIVGGHGGVL GVNGAFQMDE  360
LHEVEQFGSY IPIPVWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-15115172563ATERF1
3gcc_A1e-15115172563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235245RHRLPSRRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05217.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309128.13e-96dehydration-responsive element-binding protein 2E-like
TrEMBLA0A1B6QQ746e-95A0A1B6QQ74_SORBI; Uncharacterized protein
STRINGPavir.Ia04341.1.p1e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-29ERF family protein