PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc05095.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WOX | ||||||||
Protein Properties | Length: 216aa MW: 24211.4 Da PI: 11.1832 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.9 | 1.2e-06 | 185 | 201 | 40 | 56 |
-HHHHHHHHHHHHHHHH CS Homeobox 40 terqVkvWFqNrRakek 56 +++V++WFqNr+ + k Zpz_sc05095.1.g00010.1.am.mk 185 GDANVFYWFQNRKSRTK 201 579************99 PP | |||||||
2 | Wus_type_Homeobox | 41 | 4.5e-14 | 179 | 203 | 40 | 64 |
Wus_type_Homeobox 40 eeyGkiedkNVfyWFQNrkaRerqk 64 +eyG ++d+NVfyWFQNrk+R ++k Zpz_sc05095.1.g00010.1.am.mk 179 REYGPVGDANVFYWFQNRKSRTKHK 203 69*********************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MRANTHGHAP VFPLRHSSIC DITFTRRSAR QLRRLEYCDS TSVVAPITAN KKPSTRPCVR 60 ACADELRRLA RSWEKPTDPT GPYTIQHSIS FLFTVSPVTT HEHRPIDRAV STSNSNLAAG 120 KKGTRGSFDR WITGRAARHW PSMYRSSLAC NIQQPQPDMN NGVGGKSSLM SSILEYVSRE 180 YGPVGDANVF YWFQNRKSRT KHKLRAAGQL QPASGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc05095.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM490242 | 5e-38 | AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene). |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-11 | homeobox-3 |