PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc05084.1.g00030.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 283aa MW: 29796.6 Da PI: 8.4937 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.3 | 1.6e-31 | 24 | 127 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............s 66 aag+kdrhsk+ T++g+RdRRvRls+++a+rf+d+qd+LG+d++sk++ WL+ +a +ai++l+++ + Zpz_sc05084.1.g00030.1.am.mk 24 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIRFYDVQDRLGVDQPSKAVAWLIGAAAAAIDALPSLdrfsfalppavadadD 104 6899*************************************************************9888855554332220 PP TCP 67 sssaseceaesssssasnsssg.........k 89 a++++s+++ s+g + Zpz_sc05084.1.g00030.1.am.mk 105 --------AGAEVSASE-TSKGsvlslvnapA 127 ........222222222.22222444433321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.5E-31 | 26 | 138 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.594 | 27 | 85 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MERVVAAGME RAACKRPRAD LDAAAGGKDR HSKVVTARGL RDRRVRLSVP TAIRFYDVQD 60 RLGVDQPSKA VAWLIGAAAA AIDALPSLDR FSFALPPAVA DADDAGAEVS ASETSKGSVL 120 SLVNAPAEIA VPAAAHQTNH AVHAYSGNAG GGGAFAQPLH CAATDDDKSM RQKGPPTLAC 180 YAAQTPSPYI TPARNLGTMP QLAFLHEEQQ QQPAVVFGLG TLQSNAVAAP LWPPAQQHPF 240 LLQRFTSADA AGLPFFLGDG AAPVTSSADR RVQFWNFKQE RKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 32 | 86 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 32 | 86 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc05084.1.g00030.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101215 | 2e-62 | FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963209.1 | 1e-97 | transcription factor PCF8 | ||||
Swissprot | A2ZMR9 | 5e-67 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | A0A1E5WN18 | 1e-100 | A0A1E5WN18_9POAL; Transcription factor PCF8 | ||||
STRING | Pavir.Ca02949.1.p | 1e-98 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 4e-20 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |