PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05021.1.g00020.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 190aa    MW: 21016.2 Da    PI: 6.798
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05021.1.g00020.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.54.9e-1535664778
                                    SSEEETTT--SS--S-STTTT-------S--- CS
                             SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78
                                     +fh+lsefD+ krsCrrrL++hn+rrrk+q+
  Zpz_sc05021.1.g00020.1.am.mkhc 35 PKFHALSEFDQIKRSCRRRLNDHNARRRKQQP 66
                                    59***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114110.955164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.63E-123569IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.106.4E-43551IPR004333Transcription factor, SBP-box
PfamPF031101.0E-73664IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDWSQRGSML WDWENLSPIG ANSNDNPTIS LQAEPKFHAL SEFDQIKRSC RRRLNDHNAR  60
RRKQQPDAIS FGASRLSTMF YGIEASVAAN LNGAPDLQRA LSLLSNNSAD ASSDQPISQL  120
HPALVTIASS YNPVVQGSSG LWQDGTALDH EARFQAFDPV SNRSPIAAPH QLHLKLPAYD  180
SSPSRYDQMN
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05021.1.g00020.1.am.mkhc
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951927.15e-32squamosa promoter-binding-like protein 3 isoform X2
RefseqXP_004951928.15e-32squamosa promoter-binding-like protein 3 isoform X2
SwissprotA2X0Q66e-19SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z86e-19SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A1E5VW924e-48A0A1E5VW92_9POAL; Squamosa promoter-binding-like protein 12
STRINGPavir.Ab00358.1.p5e-28(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776