PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04966.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 467aa    MW: 49972.1 Da    PI: 8.4509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04966.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-0681103123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cgk F r  nL+ H r H
  Zpz_sc04966.1.g00020.1.am.mk  81 FVCEICGKGFQRDQNLQLHRRGH 103
                                   89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-780103No hitNo description
SMARTSM003550.01281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.61481103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-581103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355130124154IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.19E-7154179No hitNo description
SMARTSM00355160159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MFHHQLPLQD QAEAAHQDGG MSNLTSSASG PNNNPPPAPP PPPAPAASTG NKRKRSLPGN  60
PDPDAEVIAL SPATLMATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGTGKEAAR  120
KKVYVCPEAS CVHHDPARAL GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV HSDWKAHSKI  180
CGTREYKCDC GTIFSRRDSF ITHRAFCDAL TEESAKAIGL NAMHAAAPAV LFSPPQPTSQ  240
VMQQHQELAA FQEHHNHQEV LQPLPQQQVP AAQQQRCNYA MKTEMLSWPM MPYDQHAHPL  300
LQPLCNAAAQ SSATSAPLAS AHLSATALLQ KAVEMGATIS TAGGGGAHYT QMAGAARSAP  360
GSSTFGLGLP GLNAQQVDTA MGGLVRSASH GRSGEDGASG GGASDGMTRD FLGLRAFSRG  420
DILSLAGFDS CIGAVNANTS VSCYEPQEHA QQQQSNNEPW HGMGSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34155221369Zinc finger protein JACKDAW
5b3h_F9e-34155221369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04966.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569260.0EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-111IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLK3XHB60.0K3XHB6_SETIT; Uncharacterized protein
STRINGSi001287m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-95C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]