PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04894.1.g00020.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 299aa    MW: 32738.9 Da    PI: 5.4997
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04894.1.g00020.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092272612155
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                     + +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  Zpz_sc04894.1.g00020.1.am.mkhc 227 RWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 261
                                     469*****************************885 PP
2ELK34.25.4e-12181202122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELK++Ll+KYsg+L+ L++EF+
  Zpz_sc04894.1.g00020.1.am.mkhc 181 ELKDMLLKKYSGCLSRLRSEFL 202
                                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.6E-194185IPR005540KNOX1
PfamPF037902.1E-194383IPR005540KNOX1
SMARTSM012562.3E-2591142IPR005541KNOX2
PfamPF037911.6E-2295141IPR005541KNOX2
PROSITE profilePS5121310.441181201IPR005539ELK domain
SMARTSM011882.0E-6181202IPR005539ELK domain
PfamPF037896.1E-9181202IPR005539ELK domain
PROSITE profilePS5007112.762201264IPR001356Homeobox domain
SMARTSM003892.0E-14203268IPR001356Homeobox domain
SuperFamilySSF466897.7E-20203272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-27206266IPR009057Homeodomain-like
CDDcd000862.81E-13213265No hitNo description
PfamPF059204.4E-17221260IPR008422Homeobox KN domain
PROSITE patternPS000270239262IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEDLYSIHPG ISRAWAGAAS EALSGIAGGG GSPPPAADLT ELVKAQIGGH PRYPTLLAAY  60
IECRKVGAPP EVAALLEEIG RERGAARSAA GEVGIGLDPE LDEFMEAYCR VLERYREELS  120
RPFDEAASFL SSVRTQLSTL CGADASLSDE MVGSSEDEPC SGDTDLTDLG QEHSSRLADR  180
ELKDMLLKKY SGCLSRLRSE FLKKRKKGKL PKDARSALMD WWKTHYRWPY PTEEDKVRLA  240
AMTGLDPKQI NNWFINQRKR HWKPSEDMRF ALVDGVAGGG APSSGTTTRL YFDTGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196205LRSEFLKKRK
2202206KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04894.1.g00020.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105084.11e-163liguleless 4
SwissprotQ9FP291e-147KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0A9BTH01e-169A0A0A9BTH0_ARUDO; Uncharacterized protein
STRINGGRMZM2G094241_P011e-162(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-77KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]