PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04830.1.g00020.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 272aa    MW: 30141.6 Da    PI: 9.361
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04830.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA27.88.1e-09169191325
                     CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakle 25 
                                   +++V aKQy++Il+RR +Rak+ 
  Zpz_sc04830.1.g00020.1.sm.mk 169 TIFVSAKQYEAILRRRTQRAKAG 191
                                   79*******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF560531.24E-265100IPR020040Ribosomal protein L6, alpha-beta domain
Gene3DG3DSA:3.90.930.124.7E-307101IPR020040Ribosomal protein L6, alpha-beta domain
PfamPF003474.2E-121388IPR020040Ribosomal protein L6, alpha-beta domain
PRINTSPR000596.4E-112339IPR019906Ribosomal protein L6, bacterial-type
PRINTSPR000596.4E-116586IPR019906Ribosomal protein L6, bacterial-type
PROSITE patternPS0052507886IPR002358Ribosomal protein L6, conserved site
PfamPF020454.0E-5169190IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0019843Molecular FunctionrRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEAKFFRFLK LVGVGFKARS ESQGRELFLK LGYSHEVLFT APPAVRVFCF KPNIICCTGI  60
DKDRVHNFAG AVRSCKPPEV YKGKGILYFD EVIKLKPGKK QKKQMNNCPR LPHLEGVQYP  120
GSTAEVPEGS ATATPHMSVD NSGPSELIAG QRRALRLRQL PSLVPGRATI FVSAKQYEAI  180
LRRRTQRAKA GISRPSIKGG ANTDISQATS SVPAEDFYGP FVATNEDEEH VGEDAFDSIL  240
NLNSPDFTTL LRLMMGDKYN TDISEDVTWI LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5h1s_I6e-1951048518250S ribosomal protein L6
5x8p_G6e-19510485182protein L6
5x8t_G6e-19510485182protein L6
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04830.1.g00020.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946346e-84FP094634.1 Phyllostachys edulis cDNA clone: bphyst004m12, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3580023