PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04744.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 18984 Da PI: 8.5019 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.6 | 2.8e-12 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i nks r + kR++g+ K A+ L +LC+++++v+++++ Zpz_sc04744.1.g00010.1.am.mk 11 IANKSIRRAEYKKRQEGLVKMANDLTTLCGIKACVVVYGE 50 89************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.358 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.7E-7 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.24E-15 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.17E-19 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 5.3E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-12 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MAPKKVNLQW IANKSIRRAE YKKRQEGLVK MANDLTTLCG IKACVVVYGE GKPQPEVRKF 60 DHENCERETL FLLHKTMTGH HTSLVDLTNQ DLIGIKCMVE AKTKKIKECL QQLDIKQGQT 120 LQEPLVHPLL FSSQQQGDPI ALALTRVPNE TNLSDHNHEA AGWHLPW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04744.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Sb05g023895.1 | 7e-31 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP42576 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 1e-15 | M-type_MADS family protein |