PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04740.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 303aa    MW: 33903.7 Da    PI: 7.1726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04740.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-076272446
                                  HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                                  W+ Ia+ ++ gRt++++k++w++
  Zpz_sc04740.1.g00030.1.am.mk  6 WSIIASQLP-GRTDNDIKNYWNT 27
                                  *********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.573133IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-11535IPR009057Homeodomain-like
CDDcd001671.83E-5629No hitNo description
SuperFamilySSF466891.39E-6634IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MWKELWSIIA SQLPGRTDND IKNYWNTKLK KKLLGSSTVT APPHRTPRHH HRPLNLMLQH  60
SSSSFTHPTY SGFFPHATAS LHDPIVSALT LPPTEDFMLG SSLAIPNASS LLHAHGATQQ  120
QLHHHVVKEE SGSMIVFGSD QQSCSSSDGR THSRSQFSHG KELRFNGYYG YNNNGSIEHD  180
HRSLLQLQEY HQHAHQVPVE YNYDELKQLL MSSTTGSNLH GSSQVRDGGM EGFGSQGKVT  240
MLTAISACED VYLSSWSETS CMEAKHDDHR GSAHGIEILD AKIRAREMNR SEREEKIPGV  300
CRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04740.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975125.11e-108transcription factor RAX2
TrEMBLA0A3L6Q9251e-115A0A3L6Q925_PANMI; Transcription factor RAX2-like
STRINGSi010627m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.13e-09myb domain protein 87