PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04718.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 359aa MW: 38277.8 Da PI: 7.8441

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04718.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	33	1.4e-10	205	242	18	56
ZF-HD_dimer 18 GghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 Gg DG + + +++al+Ca CgCHRnFHR e Zpz_sc04718.1.g00020.1.am.mk 205 GGDGADGGTTRYRE-RGGLHIDALRCATCGCHRNFHRIE 242 67777776655555.333589****************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.9E-8	206	242	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-5	224	245	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
METGTTGGGD EMRGRHAVVP WRRRHVVVAA SKLWFNPLDP KDRMELNQLL YNPISGDPTE 60 SFSGPDGCMG AGPRVNTLLL RCWLPLPVIS RGRPWSCVPG DEPTAYTTKP QPTAHQAGWC 120 RDHKQQLASL QPAAARVPPG GRRTTVMDFD EHDDGDDEEM QQPMPVSSSY DTPMQPGLVL 180 GGGGGTPKPE DSRGSASFRT AGPGGGDGAD GGTTRYRERG GLHIDALRCA TCGCHRNFHR 240 IESGSPTTAE PAALLSPAAV TAYGVATQHP FSTYYRTPTG YLYHHQHQQH LAAAAAGHMQ 300 RPLALPSTSH SGGRDEGDDV SGMIRPTCMV VAPLVGMSLG SGSGGQSGSG MKRFRTKFT

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

METGTTGGGD EMRGRHAVVP WRRRHVVVAA SKLWFNPLDP KDRMELNQLL YNPISGDPTE  60
SFSGPDGCMG AGPRVNTLLL RCWLPLPVIS RGRPWSCVPG DEPTAYTTKP QPTAHQAGWC  120
RDHKQQLASL QPAAARVPPG GRRTTVMDFD EHDDGDDEEM QQPMPVSSSY DTPMQPGLVL  180
GGGGGTPKPE DSRGSASFRT AGPGGGDGAD GGTTRYRERG GLHIDALRCA TCGCHRNFHR  240
IESGSPTTAE PAALLSPAAV TAYGVATQHP FSTYYRTPTG YLYHHQHQQH LAAAAAGHMQ  300
RPLALPSTSH SGGRDEGDDV SGMIRPTCMV VAPLVGMSLG SGSGGQSGSG MKRFRTKFT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04718.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695882.1	2e-59	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	A2YWA6	6e-44	ZHD2_ORYSI; Zinc-finger homeodomain protein 2
Swissprot	Q6ZB90	6e-44	ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBL	A0A0E0LW02	1e-55	A0A0E0LW02_ORYPU; Uncharacterized protein
TrEMBL	A0A1D6KLI5	2e-55	A0A1D6KLI5_MAIZE; ZF-HD protein dimerization region containing protein
TrEMBL	A0A317YC70	2e-55	A0A317YC70_MAIZE; Zinc-finger homeodomain protein 2
TrEMBL	B6TE62	2e-55	B6TE62_MAIZE; ZF-HD protein dimerisation region containing protein
STRING	OPUNC08G16150.1	2e-56	(Oryza punctata)
STRING	GRMZM2G346920_P01	3e-56	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP48789	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	1e-05	homeobox protein 34

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]