PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04707.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 290aa    MW: 30791.7 Da    PI: 8.2272
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04707.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.81.3e-22174222149
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                                   +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++ g++qrfCqqCs  
  Zpz_sc04707.1.g00050.1.am.mk 174 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVTAGGKQQRFCQQCSSL 222
                                   6*********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-25167222IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.418172249IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-22173225IPR004333Transcription factor, SBP-box
PfamPF031101.6E-17175222IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMSGRMNAVT SADGDDFPFA PSMQPPPPPP YVGFDPSVPG GGMGPQRAGG MPHHLYDDLD  60
LAAAAAMQFQ EAPHHHQLLT LPSSLAAPMA PPPPVPMSLQ MPMPGLHGDV YPALGMVKRE  120
GGGGAEGGRI GLNLGRRTYF SPGDMLAVDR LLMRSRLGGV FGLGFGGAHH QPPRCQAEGC  180
KADLSGAKHY HRRHKVCEYH AKASVVTAGG KQQRFCQQCS SLPLLCLLFR VGSRGDMLLV  240
RVPCLSWVVA MAEGCGFLLL ACRAQESNLT CTSTGASRWP CPFPEFPGPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A8e-17175225656squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04707.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478861e-119KF447886.1 Triticum aestivum squamosa promoter-binding-like protein 22 (SPL22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965676.18e-82squamosa promoter-binding-like protein 10
SwissprotA2YFT92e-68SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE82e-68SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A0A9G6E53e-93A0A0A9G6E5_ARUDO; Sbp3
STRINGSi006559m3e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-21squamosa promoter binding protein-like 8