PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04555.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 493aa MW: 52880.8 Da PI: 8.3091 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.8e-15 | 97 | 144 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl Zpz_sc04555.1.g00010.1.am.mk 97 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 144 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 150 | 193 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++ Zpz_sc04555.1.g00010.1.am.mk 150 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 193 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.104 | 92 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.97E-28 | 95 | 191 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-11 | 96 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-13 | 97 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 98 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.15E-9 | 100 | 144 | No hit | No description |
PROSITE profile | PS51294 | 25.339 | 145 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 9.6E-16 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-15 | 150 | 193 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 152 | 200 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.71E-11 | 152 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MRNSLTYKEG HYRYDVEIYV SLPFPLNSRP GLSSSSTIRA STSSTCTRAR PRDQSRRDRS 60 KIELDRRAGD RSGSMRKPEC PTAAVAAAVS GGAKLRKGLW SPEEDEKLVA YMLRSGQGSW 120 SDVARNAGLQ RCGKSCRLRW INYLRPDLKR GAFSPQEEEL IVSLHAILGN RWSQIAARLP 180 GRTDNEIKNF WNSTIKKRLK SSSSTASSPA PASDHCALSP DQPSNTKLAG GGGGIDASSC 240 PDLADLDRVD GGHHLHAVTS ASGLWMVDSS SSISSSTAAR SYGYGHGGLL PLPDQLRSVA 300 ADNTPLPFFH SHAPPPFKHQ AVSALHGGYY GGHGHQHHGV AVEGCFGRGG EGLFGYVPPL 360 LAEPAAMAAA QDQDRKPLMA SSGNGNNPIT GNSSNNTTET TTTTTTLSNN ESNITDNMNK 420 DSSCLENRNV AAAAAVYWDG AHHQQLHMSS RNVMQLQGGA GECCWDLEEL MKDVHIDEVV 480 NTARSCAGCR KGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 91 | 201 | 1 | 110 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00599 | PBM | Transfer from AT5G12870 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04555.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075094 | 1e-163 | KT075094.1 Panicum virgatum secondary wall-associated MYB domain-containing protein (MYB46A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808414.1 | 1e-130 | myb-related protein 330-like | ||||
TrEMBL | A0A1E5W898 | 1e-138 | A0A1E5W898_9POAL; Transcription factor MYB46 | ||||
STRING | Pavir.Ca02370.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9821 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 1e-64 | myb domain protein 46 |