PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04552.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 445aa MW: 48952.2 Da PI: 6.8909

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04552.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.5	4e-18	11	81	2	72
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 C aC+++rrkC++dCv+ap+f ++ ++fa+++++FGas v++ l++ ++ er +a++ lv A a + P Zpz_sc04552.1.g00020.1.am.mk 11 CVACRHMRRKCEPDCVFAPHFGPDDGERFAALERVFGASFVSQQLADREPRERAAAIEMLVRIAIASVPRP 81 9********************************************************99998887776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.951	9	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-17	11	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFA ALERVFGASF VSQQLADREP 60 RERAAAIEML VRIAIASVPR PAGVKAQQEA AAAQISREQV LIRQYHTGTG FGVPAYQSAE 120 YQAMIASHQE MLMRNAGAVY QPLELEELLQ GAAAKQKSTL QPVAELQQQR TAAKEVARHH 180 DMVTRQAAAA QNYQALGLEQ QREGAAAKQK SILQPVAELQ QQQTAADVVA RYHDMVMRQA 240 AAAVQNYQAL GLEQQREGAA AKQKSILQPV AELQQQRTAA DEVARYHDMM MRQAAAAAAV 300 QNYQALGLEQ QRESAAAKQK SMLQPVAELQ QERTAADEVA RHHAMMMRQA AAAQNYLGIE 360 QQREGAAAKQ KSMLQPVAEL QQQRTAAEEV ARHHDKMMQQ AAAAQNYQAL GLEQQHQNRQ 420 LAEGVMHQTE LTAEAAKRAT AEEAA

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFA ALERVFGASF VSQQLADREP  60
RERAAAIEML VRIAIASVPR PAGVKAQQEA AAAQISREQV LIRQYHTGTG FGVPAYQSAE  120
YQAMIASHQE MLMRNAGAVY QPLELEELLQ GAAAKQKSTL QPVAELQQQR TAAKEVARHH  180
DMVTRQAAAA QNYQALGLEQ QREGAAAKQK SILQPVAELQ QQQTAADVVA RYHDMVMRQA  240
AAAVQNYQAL GLEQQREGAA AKQKSILQPV AELQQQRTAA DEVARYHDMM MRQAAAAAAV  300
QNYQALGLEQ QRESAAAKQK SMLQPVAELQ QERTAADEVA RHHAMMMRQA AAAQNYLGIE  360
QQREGAAAKQ KSMLQPVAEL QQQRTAAEEV ARHHDKMMQQ AAAAQNYQAL GLEQQHQNRQ  420
LAEGVMHQTE LTAEAAKRAT AEEAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-13	11	70	12	71	LOB family transfactor Ramosa2.1
5ly0_B	5e-13	11	70	12	71	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04552.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	2e-16	LBD family protein