PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04474.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Dof
Protein Properties Length: 272aa    MW: 28434.1 Da    PI: 10.8453
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04474.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof70.13.3e-22731092662
                        zf-Dof  26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                    sqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+ 
  Zpz_sc04474.1.g00030.1.am.mk  73 XSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRA 109
                                   68******************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088416.58153107IPR003851Zinc finger, Dof-type
PfamPF027011.1E-1673107IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-1374107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAFSLPILLD PPNADAAAAV TAVSPGRWWR RKRPPPPDAF ASRSCPSARR PGRHRGERAG  60
GRRVVHLAAA XXXSQPRHFC KACRRYWTRG GALRNVPVGG GCRRNTKRAS KKASRQGAAG  120
GATAASSSSS TTATSTTVTT TTTSSAAAAE VLASMHAQLP HLGLPPAVAL EASLEGHHHY  180
LPLQMQQQFL QQGLDGYHFT DGDGGGVFAD GLPRGVASGL LAQLAAVKME EHNNGGAVAA  240
AHEQSYWPGS GGNEWPTEFL SGFSLSSSGN VL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04474.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715641e-91EU971564.1 Zea mays clone 367228 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333768.12e-63uncharacterized protein LOC103650524
TrEMBLA0A0A9DMN52e-70A0A0A9DMN5_ARUDO; Uncharacterized protein
STRINGPavir.Ca02598.1.p2e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.12e-17Dof family protein