PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04426.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 385aa MW: 43042.5 Da PI: 4.864 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.6 | 1.3e-45 | 61 | 186 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratks 80 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp+ ++++++++w+fFs+ d+ky++g+r++r+t + Zpz_sc04426.1.g00010.1.am.mk 61 PPGFRFSPTDEELVLYFLKRRIASGRPTP--YIADVDVYKFHPSHLPErsALQTGDRQWFFFSRLDRKYPNGSRASRTTGD 139 8*********************9999555..6**************94357888999************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg+d+ v+s +g+ vg kktLv+++grap+ge+tdWvm ey++ Zpz_sc04426.1.g00010.1.am.mk 140 GYWKATGRDRFVCS-GGRSVGNKKTLVYHHGRAPRGERTDWVMYEYTI 186 *************9.99*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-53 | 55 | 209 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.906 | 60 | 209 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-23 | 61 | 186 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MGMQAGPNSS CHLMRLHGAE RARVQLRFGP RRSRTSSPPT TRQYATHPSG VMENPPPRRW 60 PPGFRFSPTD EELVLYFLKR RIASGRPTPY IADVDVYKFH PSHLPERSAL QTGDRQWFFF 120 SRLDRKYPNG SRASRTTGDG YWKATGRDRF VCSGGRSVGN KKTLVYHHGR APRGERTDWV 180 MYEYTILADA LPQAAEAREA YALYKLFQKS GVGPKNGEQY GAPFREEDWL DDEEEHGLPS 240 GAAAHTVTTT TNNCTAAIEE QADRELTVGE LAELLSEFGN DQDQGEAPLD FSTPTSQCQG 300 WFNDAGNKLE SVDTTTVSGA LPVVENVCTD LPLGDIEELL MQISDDQQNS ELLSDFPTSV 360 PELQCQHEDH QVWLDADKGE EVDAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-43 | 61 | 186 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04426.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802095.1 | 1e-179 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A2T7EU37 | 1e-178 | A0A2T7EU37_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04800.1.p | 1e-176 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 4e-67 | NAC domain containing protein 17 |