PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04404.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 340aa MW: 37165.2 Da PI: 9.6524

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04404.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	140.1	5.8e-44	190	268	24	102
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +rikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+dflvdivprd++k Zpz_sc04404.1.g00010.1.am.mk 190 SRIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDDMK 268 8***************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.2E-25	179	258	IPR009072	Histone-fold
Pfam	PF00808	8.9E-18	190	249	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.9E-34	190	264	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
EARRGGADLR RGGQAGDGGD PKKRGGAGSG VPAAGVAVAA GAGGCGMHRP AEHGECVHRP 60 LPAAEVLRPS LPSNTVYARR PRRTRIYYDR RVARSLSLTP LLELYKSSRP HTPATPPARP 120 LALPISSNPP RFTVTTRECR DSEVSACRST EMAECTAGAA REQPSTPGCR SRGCGVRALG 180 RLVRRLRRQS RIKKIMKADE DVRMISAEAP VVFAKACEIF ILELTLRSWM HTEENKRRTL 240 QKNDIAAAIT RTDIYDFLVD IVPRDDMKEE GVGLPSVGVP PMQGPSAAYP YYYVPQQQMA 300 GAGMVYGGQQ GHPVTYMWQE PHEQQEQQAT EEQRSLPESG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-44	190	264	21	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	242	RRTLQKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04404.1.g00010.1.am.mk

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF939122	1e-168	KF939122.1 Cynodon dactylon nuclear factor Y subunit C (NF-YC) mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-50	nuclear factor Y, subunit C2