PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04374.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 375aa    MW: 41254.6 Da    PI: 10.8237
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04374.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY110.23.9e-3417432324162
                         YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnv......ekeesast 94 
                                   v vP + l+ +vtv+CGhC +l  ++l+  + + ++  +  + l +      + +  ++   +   v       ++ + + 
  Zpz_sc04374.1.g00020.1.am.mk 174 VGVPCKRLMDTVTVKCGHCNNLSYLSLRPPMVQPPSPTD--HPLGPFqverSTLNSTTHPYLFVAVVpsaapsWEKGHCND 252
                                   88********************98889888777666553..3443331112333333333333322200000022333333 PP

                         YABBY  95 svssekl...senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                                    ++++ l   s  + e   r p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  Zpz_sc04374.1.g00020.1.am.mk 253 CRRNQPLplpSPTSAEVGRRLPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 323
                                   33333436644444555555666**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.8E-38174324IPR006780YABBY protein
SuperFamilySSF470953.4E-8267325IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.6E-5278325IPR009071High mobility group box domain
CDDcd013905.90E-5285326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSLFLLSLGA HTCACREIDG SSVCRSGRVR ILLASKRFYG VQGAARSLAR PTDRCGWSRA  60
YGAMCACPGH YCRNKNPTPS SLGTRPARFP LLLPPPSPSS SPDSVRHPAK EACTPEGLTH  120
RSAAVASAAN HQEPSKHGFG GAVRAPVLRA LHLLQHRARG KLLERNRIRS GSRVGVPCKR  180
LMDTVTVKCG HCNNLSYLSL RPPMVQPPSP TDHPLGPFQV ERSTLNSTTH PYLFVAVVPS  240
AAPSWEKGHC NDCRRNQPLP LPSPTSAEVG RRLPFVVKPP EKKHRLPSAY NRFMREEIQR  300
IKAAKPDIPH REAFSMAAKN WAKCDPRCSK AVSTASSNNA PQPRLVSTPQ MLLQERAKEQ  360
VVESFDIFKQ IERSI
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04374.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4702683e-80AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468276.11e-99protein DROOPING LEAF isoform X2
RefseqXP_021307124.11e-99protein DROOPING LEAF isoform X1
SwissprotQ76EJ08e-86YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A1B6QPL92e-98A0A1B6QPL9_SORBI; Uncharacterized protein
TrEMBLC5NS032e-98C5NS03_SORBI; DL related protein
STRINGPavir.Ia04690.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-36YABBY family protein