PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04297.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 313aa    MW: 33784.4 Da    PI: 9.6382
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04297.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52131411128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                   lppGfrFhP+d+elv++yL++kv+g+  ++ ++  + +vd+++vePwdLp++++ + +ewyfFs +d+kyatg+r+nrat 
  Zpz_sc04297.1.g00020.1.am.mk  13 LPPGFRFHPRDDELVCDYLAPKVAGRVgFSGSRPpMVDVDLNRVEPWDLPAAASVGPREWYFFSLKDRKYATGQRTNRATV 93 
                                   79***********************9986665666***************88888999*********************** PP

                           NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   sgyWkatgkd++v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+
  Zpz_sc04297.1.g00020.1.am.mk  94 SGYWKATGKDRPVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 141
                                   **************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-594165IPR003441NAC domain
PROSITE profilePS5100556.32613165IPR003441NAC domain
PfamPF023652.1E-2714141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSASFLSMVE AGLPPGFRFH PRDDELVCDY LAPKVAGRVG FSGSRPPMVD VDLNRVEPWD  60
LPAAASVGPR EWYFFSLKDR KYATGQRTNR ATVSGYWKAT GKDRPVARRG ALVGMRKTLV  120
FYQGRAPKGR KTEWVMHEYR MEGHEQSPKL AAKEEDWVLC RVICKKKSAG GGATTKPARG  180
FATNGYGTAT TTSPPPPALM DTTLAQLQAA MNTKGAGAGA IEQVPCFSSF NNIASNSVSA  240
ANAAQQCYLP VATSSNGMSY LDHGLTDLGS CFDPLNSDKK WLKAVLSQVG VAVMHSPPPD  300
VAAATSSTWM NHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-511016812171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04297.1.g00020.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714641e-126AK071464.1 Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805880.11e-175NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-78NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2T7EJ771e-175A0A2T7EJ77_9POAL; Uncharacterized protein
STRINGBRADI4G02060.11e-157(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-75NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]