PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc04295.1.g00080.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 112aa MW: 12564.9 Da PI: 5.0473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.1 | 2.2e-08 | 1 | 26 | 31 | 56 |
AP2 31 fslgkfgtaeeAakaaiaarkklege 56 ++lg+f tae Aa+a+++a+++++g+ Zpz_sc04295.1.g00080.1.am.mk 1 VWLGTFATAEAAARAYDRAARRIRGA 26 7**********************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-4 | 1 | 25 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-10 | 1 | 34 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-5 | 1 | 39 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.195 | 1 | 33 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-16 | 1 | 34 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 112 aa Download sequence Send to blast |
VWLGTFATAE AAARAYDRAA RRIRGAKAKV NFPNEDPPPD NEYDDHVMMP VDYDAVLGLF 60 QHHPPYVHDA VPVNAAPEVA YVHHHQQQQQ QHDVDAGIEL WTFDNIGTTV PI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc04295.1.g00080.1.am.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ244468 | 4e-55 | DQ244468.1 Zea mays clone 7948 mRNA sequence. | |||
GenBank | EU976870 | 4e-55 | EU976870.1 Zea mays clone 992413 mRNA sequence. | |||
GenBank | KJ728348 | 4e-55 | KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644689.1 | 9e-23 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0E0LPQ7 | 2e-23 | A0A0E0LPQ7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G24590.1 | 3e-24 | (Oryza punctata) |