PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04213.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 671aa    MW: 72572.9 Da    PI: 10.7751
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04213.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.5e-16519566355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g
  Zpz_sc04213.1.g00020.1.am.mk 519 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRG 566
                                   9***9.55.6*********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-21518579IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-14518569IPR016177DNA-binding domain
PROSITE profilePS5103218.307518580IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-21519569IPR001471AP2/ERF domain
PfamPF008471.7E-8519566IPR001471AP2/ERF domain
CDDcd000184.03E-12519569No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MLGSGLNLVT TVIGFGMSAT FIVFVCARLI CGRAARADAD DTAAAAAARV MAQPPAPFDF  60
DVEFRAADLD RTVRPYALLR LHSILEASNV KATASPLRGL PQLLGRPESS ASRSPHWILP  120
IHRDRTGGGQ NNPSSQESLE AVTPVPAAVR PVTFHPRRNI YGIRSPFPLC LHCEPLSGHI  180
TFHGRLLRHL NFARTQSRLS LASVQRRKRK VSSRVANEHV SRAATFLPPR RAELAFRTPV  240
TDPPRSHVAS TMPRADRGNL WERSRDTGLP AESRVRPANR DSRKVADRGR HGSGSRAAPL  300
QGHWTLVRPP DRGRFFVPKQ TDSDRSLQGT GRSVVVHARV SVVVAADIPE RIPCPTTARL  360
RPSCGHDNLR RSRQMASEKK KDESPGPRLE ATRQPQSDAF PASLSLTATA PLPSCSPEDK  420
TKRGKGNQLS ASHPPAQITR LPPQRAVSLH CQRPQQQQSP ASSPPDTKPQ APGPGPSSPC  480
STTPPVAQGD ATTGVSTAPA AATSSGEPSP RSSGKHAFYR GIRCRSGKWV SEIREPRKAR  540
RIWLGTYPTA EMAAAAYDVA ARALRGTDAL EHPHGGVDAP DAAAPALAPY QRLQQQYGMS  600
SAATGASSCA PQQEFGNEEF MDEEAIFEMP QLLRNMAAGM MMSPPRLSPY TSDESPDPSE  660
AGESLWSYRD P
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04213.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988962e-89FP098896.1 Phyllostachys edulis cDNA clone: bphylf043a21, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-28ERF family protein