PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04199.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 10609.8 Da PI: 8.5055 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.9e-08 | 17 | 64 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT +++ +a + + + +W+ +ar+mg +++ +++ ++ ++ Zpz_sc04199.1.g00010.1.sm.mk 17 AWTHRQNKQFECALAVYDRDtpdRWHNVARYMGGAKSPDEVRRHYEQL 64 7*****************99*************999*********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.133 | 10 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.7E-6 | 14 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.06E-10 | 16 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-4 | 17 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.3E-6 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.71E-7 | 17 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MATGGGSSKQ QGSSASAWTH RQNKQFECAL AVYDRDTPDR WHNVARYMGG AKSPDEVRRH 60 YEQLIEDVAQ IEAGQVPLFP SFAPAARGAA GLARQHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-23 | 14 | 82 | 7 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04199.1.g00010.1.sm.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728246 | 2e-53 | KJ728246.1 Zea mays clone pUT6523 MYB-related transcription factor (MYBR57) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441575.2 | 9e-35 | protein RADIALIS-like 3 isoform X1 | ||||
Refseq | XP_008650058.1 | 1e-34 | protein RADIALIS-like 3 | ||||
Refseq | XP_021303965.1 | 1e-34 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025809060.1 | 1e-34 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-26 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | J3MA34 | 4e-37 | J3MA34_ORYBR; Uncharacterized protein | ||||
STRING | OB05G34580.1 | 7e-38 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 2e-26 | RAD-like 6 |