PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04158.1.g00060.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 21650.8 Da PI: 7.4682 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.9e-10 | 11 | 54 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++ + Ed+++ + +G+ W+ Ia+ ++ gRt+ +k++w++ Zpz_sc04158.1.g00060.1.am.mk 11 GNFVPAEDKIICEMYSTMGSC-WSVIAAQLP-GRTDLAVKNYWNST 54 678899***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.24E-13 | 2 | 60 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 2 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.538 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-10 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-9 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.93E-8 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
LNYLRLGLKH GNFVPAEDKI ICEMYSTMGS CWSVIAAQLP GRTDLAVKNY WNSTLKKRFR 60 PAARTAAFAR RRLHPSPTAS TSDAGTPARD LQLVVHSDES STAGSPTSVK AVHPLGPVGA 120 GREPIEAVPV RVSAPVKTDV GGLPLTTPTA PPPPERCGQT GGMAMDIICV PMSPLPLDVT 180 DPELACICGF DDIHSFLPWF DGH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04158.1.g00060.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661280.1 | 9e-69 | transcription factor RAX2 | ||||
TrEMBL | A0A3L6TU28 | 2e-68 | A0A3L6TU28_PANMI; Transcription factor RAX2-like | ||||
STRING | Si037244m | 4e-68 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 2e-21 | myb domain protein 68 |