PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04116.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 329aa    MW: 34615.8 Da    PI: 6.3348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04116.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.7e-14182227755
                           AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   r+++ +g+++AeIrd + ng   r+++g f+t+e Aa a+++a+ ++ g
  Zpz_sc04116.1.g00010.1.am.mk 182 RRRP-WGKYAAEIRDSTRNG--ERVWIGIFDTPEAAALAYDQAAYSMCG 227
                                   6777.**********44465..**********************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-24177241IPR001471AP2/ERF domain
PROSITE profilePS5103218.729177235IPR001471AP2/ERF domain
PRINTSPR003674.2E-5178189IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-18179236IPR016177DNA-binding domain
CDDcd000181.41E-11179236No hitNo description
Gene3DG3DSA:3.30.730.102.9E-23180236IPR001471AP2/ERF domain
PfamPF008474.1E-9182227IPR001471AP2/ERF domain
PRINTSPR003674.2E-5201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
LVHGAYSHYN FPCYDETSYP SNTTAAAAGG HQPSSVYASP QYGGGGYSHH QSSPAGWVSS  60
SMPSSSPSHH HHYQQQQLQF GGGVDDYHRG HVDLDQFSAL MGAASISTTT TTTSRSSAST  120
TYAPSAASCW ATEAFTGAHS SSAATVHANV IVDGSSPGDQ HLQVQPNCGD GEDADAALVG  180
GRRRPWGKYA AEIRDSTRNG ERVWIGIFDT PEAAALAYDQ AAYSMCGPGA VRNFPVRRVQ  240
ETLRDLGLSG AAAAGDSPVL ALKRCHCIRK RSPKGKKAAG EAQITATCSG YGKQKQAAAS  300
GVLELEDLGP DYLEELLALS YDPISEDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-211802351772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04116.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.13e-68ethylene-responsive transcription factor 1
TrEMBLC5XCK53e-81C5XCK5_SORBI; Uncharacterized protein
STRINGSb02g005840.15e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-27ethylene response factor 1