PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04101.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 573aa    MW: 61065.2 Da    PI: 11.5408
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04101.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.31.1e-332703883125
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec..eae 76 
                                   g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai  l+ +            +  e++
  Zpz_sc04101.1.g00010.1.am.mk 270 GGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAGAIERLPALdpaafA------AapEPG 344
                                   78*************************************************************444330......233223 PP

                           TCP  77 sssssasnsssgkaaksaakskksqksaasalnlak.esrakarararer 125
                                   +   + ++ s       +  s+ s++s+ s l+l++ +sr    + +r+r
  Zpz_sc04101.1.g00010.1.am.mk 345 EAATKRQQGSV------SGGSSTSETSKGSELSLSRsDSRGGGASASRDR 388
                                   33222221111......112233333333334444444443333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.452271329IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-33271382IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
TSCFVLHGAV RGMDVSHPAV ERATCRGQSS RYARHGSKRR TPATSPSTAA IPTHPTDRLT  60
DECARAVQRR RRCRSQTALA VGPSNAFRRR CFPLLSAAFA SPQCPAREQT QSVSVSGWQC  120
APQETATKRW HEPFTAFEQQ QGRRGRRAPT RRQKQGHPPG VAVATHISAA AAAAALLWHR  180
IDRNRQAPPV HRSSSIKTPH FYERLRRAGM ENRAAGDGAS GRPHGGAKRG RGGVMRGSET  240
ETAWGQPPAL PPPPRGAGTA SRICRVGRGG GKDRHSKVYT AKGIRDRRVR LSVPTAIQFY  300
DLQDRLGFDQ PSKAIEWLIN AAAGAIERLP ALDPAAFAAA PEPGEAATKR QQGSVSGGSS  360
TSETSKGSEL SLSRSDSRGG GASASRDRDV TVASTSTQAA SFTELLTGAA EHRQAWQPQP  420
NVSAAVAHTE KGANGLSTHV LSAPTVVKFG NAPPFGMVPA QPLNFPTPVE MPHFSLAQDA  480
LAASSAPAGD SNLNFSMSSG FLGANRGTLQ SNPQTNFSGH HHQQLQRLEG QFLFGYAAAA  540
AAHPSSDNQL NASPAIQLWD GFRHPGMKEK SKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-24276330155Putative transcription factor PCF6
5zkt_B6e-24276330155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04101.1.g00010.1.am.mk
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644443.11e-164transcription factor PCF6
SwissprotQ10CE83e-94PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A1D6GG321e-163A0A1D6GG32_MAIZE; Transcription factor TCP2
STRINGGRMZM2G089361_P011e-164(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.26e-30TCP family protein