PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04076.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 423aa    MW: 42704.6 Da    PI: 9.3859
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04076.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702199.41.1e-612203802154
                          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelks 80 
                                     +sg++sC dCGnqakk+Cah+RCRtCC+srgfdC thvkstWvpa +rrerqq + aa ++  +   + a+kr+r   +
  Zpz_sc04076.1.g00020.1.sm.mkhc 220 GSGGTSCYDCGNQAKKGCAHNRCRTCCNSRGFDCDTHVKSTWVPAVRRRERQQLAGAAGASPPS--PAGAAKRPRLACQ 296
                                     57889**********************************************9999998777766..6778899999999 PP

                          DUF702  81 kkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149
                                     +++ a s+t++s+a++++++etss          lP++v+ +a+frcv+v+svddg+ e+aYq+av+i+Gh+f+G+Lyd
  Zpz_sc04076.1.g00020.1.sm.mkhc 297 TNTGANSRTSTSNATTPRSFETSSshqdasfresLPRHVRGPALFRCVQVTSVDDGQREVAYQAAVTINGHLFRGLLYD 375
                                     99999*****************9999***************************************************** PP

                          DUF702 150 qGlee 154
                                      G+e+
  Zpz_sc04076.1.g00020.1.sm.mkhc 376 LGAED 380
                                     **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.4E-55223379IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-24225267IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.4E-21331377IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MILLRNLLSS LQSIFLVVVF VEKTRRSSIG RPPSCDPVLC SAAATPPRAS VASSGRRFAS  60
APDSTAVADW LPSPVGGGRG GDLSLGFNAG APAAGASSLA TGFLGSAASR HQAAAAALGY  120
GAVNAAGDVG MVLVGPAGGS SFHHQRAATA AASPDDPMFP LVAVAQRALD ANAAKPAAPG  180
PAIQFWQAPP PAAAADGSPG NKPRAVTDYG RGRADSGGSG SGGTSCYDCG NQAKKGCAHN  240
RCRTCCNSRG FDCDTHVKST WVPAVRRRER QQLAGAAGAS PPSPAGAAKR PRLACQTNTG  300
ANSRTSTSNA TTPRSFETSS SHQDASFRES LPRHVRGPAL FRCVQVTSVD DGQREVAYQA  360
AVTINGHLFR GLLYDLGAED ARATSAAAQL GSSDLHLGSA SANAAPDLYS GGSGPLILGG  420
LGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04076.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806754.11e-127protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A3L6SZ111e-118A0A3L6SZ11_PANMI; Protein LATERAL ROOT PRIMORDIUM 1-like
STRINGPavir.Cb01442.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-42Lateral root primordium (LRP) protein-related