PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04052.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 238aa MW: 27396.3 Da PI: 9.6892

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04052.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.5	3.6e-42	59	190	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknra 77 ppGfrF Pt+eel+ +yL+++++g + ++e++i+ vdiy+++P+dL++ + + + ++w+fF++r++++ +g r+ r+ Zpz_sc04052.1.g00040.1.am.mk 59 PPGFRFYPTEEELLGFYLRHRLAGMRPDVERFIPVVDIYSYHPRDLQSmagaA-NVsDPEQWFFFCPRAERELHGGRPART 138 9**************************999**********9434432.222556***************** PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 t sgyWkatg+ v+s+ ++++g k+t+vfy+grap+g+kt+W m+ey++ Zpz_sc04052.1.g00040.1.am.mk 139 TPSGYWKATGSPSWVFSSsANRVIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 190 ************9867788*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-47	56	216	IPR003441	NAC domain
PROSITE profile	PS51005	47.72	58	217	IPR003441	NAC domain
Pfam	PF02365	7.2E-23	59	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDAPTSAMAV QRMQLLQNFF TLLWELLSRH QHHRPLYKYV QCIRLNMETT GGGVDPIFPP 60 GFRFYPTEEE LLGFYLRHRL AGMRPDVERF IPVVDIYSYH PRDLQSMAGA ANVSDPEQWF 120 FFCPRAEREL HGGRPARTTP SGYWKATGSP SWVFSSSANR VIGEKRTMVF YQGRAPTGTK 180 TRWKMNEYKA VADPAVAVAV VPPRLGNEFS VCRVYISTGT LRSFDRRPLN HDDIHHHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	54	215	9	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	54	215	9	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	54	215	9	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	54	215	9	163	NO APICAL MERISTEM PROTEIN
4dul_A	1e-28	54	215	9	163	NAC domain-containing protein 19
4dul_B	1e-28	54	215	9	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04052.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978711.1	1e-103	NAC domain-containing protein 90
Swissprot	Q9FMR3	6e-65	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	K3ZJF4	1e-102	K3ZJF4_SETIT; Uncharacterized protein
STRING	Si026707m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-63	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]