PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04052.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 314aa MW: 34169.3 Da PI: 11.5517

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04052.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77.7	2.6e-24	9	84	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++w+fF++r++++ +g r+ r+t sgyWkatg+ v+s+ ++++g k+t+vfy+grap+g+kt+W m+ey++ Zpz_sc04052.1.g00010.1.am.mk 9 DPEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSWVFSSsANRVIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 84 4569**********************************9867788*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.948	1	111	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-27	7	110	IPR003441	NAC domain
Pfam	PF02365	5.1E-12	10	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAGAANVSDP EQWFFFCPRA ERELHGGRPA RTTPSGYWKA TGSPSWVFSS SANRVIGEKR 60 TMVFYQGRAP TGTKTRWKMN EYKAVADPAV TVAVVPPRLR NEFSVCRVYI STGTLRSFDR 120 RPLNHADIHH HHQLVLPPPA ANTGSTQLFG GDVVANGNGQ TETSRDSSSF GSRGMVVDGD 180 NAIDWDSLMI PLADDGLSFS ADGLARAETR KKFASPRDPN AVRAVRSSQN GMRTTRIPWP 240 RKARPIEITI IGNLPKQTGS GQSPSAARRR KGSTAACPHR RARARHDHRA ELFSTVGSDL 300 GSAAPRRAAR TNGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-16	11	109	71	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-16	11	109	71	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-16	11	109	71	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-16	11	109	71	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-16	11	109	74	166	NAC domain-containing protein 19
3swm_B	2e-16	11	109	74	166	NAC domain-containing protein 19
3swm_C	2e-16	11	109	74	166	NAC domain-containing protein 19
3swm_D	2e-16	11	109	74	166	NAC domain-containing protein 19
3swp_A	2e-16	11	109	74	166	NAC domain-containing protein 19
3swp_B	2e-16	11	109	74	166	NAC domain-containing protein 19
3swp_C	2e-16	11	109	74	166	NAC domain-containing protein 19
3swp_D	2e-16	11	109	74	166	NAC domain-containing protein 19
4dul_A	1e-16	11	109	71	163	NAC domain-containing protein 19
4dul_B	1e-16	11	109	71	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04052.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC112209	2e-68	AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence.
GenBank	AK106277	2e-68	AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence.
GenBank	AK109939	2e-68	AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
GenBank	AP014967	2e-68	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	2e-68	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978711.1	9e-78	NAC domain-containing protein 90
TrEMBL	K3ZJF4	2e-76	K3ZJF4_SETIT; Uncharacterized protein
STRING	Si026707m	3e-77	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	5e-44	NAC domain containing protein 61