PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03865.1.g00020.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 186aa MW: 20656.8 Da PI: 9.8517

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03865.1.g00020.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.6	8.8e-33	80	136	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF Zpz_sc03865.1.g00020.1.sm.mkhc 80 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 136 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.3E-35	78	139	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.652	79	139	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.4E-27	81	136	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-23	82	104	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	84	104	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-23	113	136	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MAEPRDHRAE DQHQNKQKEA EPEDQREASA TSSGSQTMVG TTPPDYVATY APPDMGHAMM 60 HRPLVGMPPA GLPLPTDAIE EPVYVNAKQY NAILRRRQSR AKAESERKLI KGRKPYLHES 120 RHQHALKRAR GAGGRFLNSK SEDKEENSDS SHKEKQNRVV PRNSGRPSSP TSPNGATSAN 180 HADNHE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-22	79	162	1	78	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03865.1.g00020.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963231.1	1e-96	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	9e-44	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0A9GEL2	7e-96	A0A0A9GEL2_ARUDO; Uncharacterized protein
TrEMBL	A0A2T7EJ84	8e-96	A0A2T7EJ84_9POAL; Uncharacterized protein
STRING	Si023231m	4e-96	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-38	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]