PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03854.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 309aa    MW: 33078.1 Da    PI: 10.436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03854.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191257147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + 
  Zpz_sc03854.1.g00030.1.am.mk 12 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 57
                                  79******************************.***********985 PP
2Myb_DNA-binding54.72.4e-1764107146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   r ++T+eEd  +++a+++lG++ W++Iar ++ gRt++ +k++w++
  Zpz_sc03854.1.g00030.1.am.mk  64 RRPFTAEEDAAILRAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 107
                                   679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.481762IPR017930Myb domain
SuperFamilySSF466891.8E-319105IPR009057Homeodomain-like
SMARTSM007179.6E-171160IPR001005SANT/Myb domain
PfamPF002494.0E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-251365IPR009057Homeodomain-like
CDDcd001674.32E-161456No hitNo description
SMARTSM007174.6E-1663111IPR001005SANT/Myb domain
PfamPF002493.8E-1564107IPR001005SANT/Myb domain
PROSITE profilePS5129421.39564113IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2466113IPR009057Homeodomain-like
CDDcd001678.57E-1366109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAGAEAECDR IKGPWSPEED EALRRLVERH GARNWTAIGR GIPGRSGKSC RLRWCNQLSP  60
QVERRPFTAE EDAAILRAHA RLGNRWAAIA RLLPGRTDNA VKNHWNSSLK RKLPTATNNA  120
EAERPCKRVS PAPGSPTGSS DRSELSHGSV GGGGGAQVFR PFPRAGRFDA IRAADVRPAP  180
PPTTTSRRDE DPLTSLSLSL PGQQDQQGSS GFRHDSARSH FHELSPLRSP SPPSPLKPPA  240
EASSSQPLPY PFSGELMAAM QEMIRAEVRK YMSGPGLRAG CGPGAVGEAC VVDGVVGAAA  300
ERVGVVTRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-4191154110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00653PBMTransfer from LOC_Os02g09480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03854.1.g00030.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147631.11e-143uncharacterized protein LOC100281240
SwissprotO231607e-68MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3L6RS061e-150A0A3L6RS06_PANMI; Uncharacterized protein
STRINGGRMZM2G145444_P011e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.16e-69myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]