PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03852.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 441aa    MW: 46698.2 Da    PI: 8.1679
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03852.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19361395135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG+++++ +l
  Zpz_sc03852.1.g00060.1.am.mk 361 CSHCGVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 395
                                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-18355409IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.163355391IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-14358418No hitNo description
Gene3DG3DSA:3.30.50.103.0E-15359393IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.40E-15360417No hitNo description
PfamPF003203.4E-17361395IPR000679Zinc finger, GATA-type
PROSITE patternPS003440361386IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MVHQTLAPST ASASSPFVNA NDAATPAPAP CSSSHPSPRG SARPSYANHH SLMVRSGAAG  60
LQFVILMRVF WGHKDGTMDA LKSSAFSPEE TAEDAAAANA ALVEREGFSI EDLLDMEVFG  120
EPDTDSADQE DAPPPPATTA EETDEKSSPG KSQPSSIVTY ELPPPPPEMV DLPAHDVEEE  180
LEWVSRVIDD SLSEVPPPPQ PLAMAAAQAA RSPLAHHRLP HDGPYRAVPP APGPLRTLST  240
DVLVPVKAKR SKRSPSSAWY VSGASLFSDS TSSSSTATTS SSSSSSASFP SFLLDSPLFS  300
SPDFEGYPQF LQPRRKKSKH STGGKQKPKK RGRKPKHAPQ LTGTAAAAAA ASQVTQGDRR  360
CSHCGVQKTP QWRAGPEGAK TLCNACGVRF KSGRLLPEYR PACSPTFVSS IHSNSHRKVL  420
EMRRKKEAGL VATAAPAVAS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03852.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9471365e-89EU947136.1 Zea mays clone 328769 mRNA sequence.
GenBankEU9554325e-89EU955432.1 Zea mays clone 1531924 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.11e-130uncharacterized protein LOC100284693
TrEMBLA0A0A9D1L51e-130A0A0A9D1L5_ARUDO; Uncharacterized protein
STRINGSi010126m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5