PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03837.1.g00020.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 443aa MW: 49178.9 Da PI: 7.781

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03837.1.g00020.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.1	2.3e-14	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++ k++G W++I +++g +t+ q++s+ qk+ Zpz_sc03837.1.g00020.1.sm.mkhc 56 REKWTEDEHKLFLESLKLHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 100 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.47E-14	50	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.272	51	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-8	53	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-14	54	103	IPR006447	Myb domain, plants
SMART	SM00717	5.5E-12	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-12	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	2.77E-9	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MARFQEFEVR NDQIAAGGDV GHEDHLKNPL NSGVVDLPDE ERVPKARKPY TISKQREKWT 60 EDEHKLFLES LKLHGRAWRR IQEHIGSKTA VQIRSHAQKF FSKVTRESTA DGNGVVAAPR 120 IRIPPPRPKR KPTHPYPRKL GNSPGKGAPY RKLLDKPQLQ VVPSSYEQEN DSPKSVLTRA 180 QVVRSPASSV GAEDRCSAQR IAAVEVATQL PPYKVYNGDS VSKHSNCGIP ESPVLRLFGK 240 RVVVNGLHQQ PNLDPGNQQN VADMELDASA ETSTTGTEKL SSCGAAEANT LSPYPTDKHQ 300 FMYYLPQGKV LFVPSDCQFF SYNNGSMDCT VSNPQAKQQQ NQPSQAADCR FRSGEGSCTE 360 SITTSSSVPE TPTQNSESVD SVQVLAYNEE DEVIPVPGSR KYVNPNPDSL RGFVPYKYNA 420 EREMVQSQTD EVQADREMTR LCL

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MARFQEFEVR NDQIAAGGDV GHEDHLKNPL NSGVVDLPDE ERVPKARKPY TISKQREKWT  60
EDEHKLFLES LKLHGRAWRR IQEHIGSKTA VQIRSHAQKF FSKVTRESTA DGNGVVAAPR  120
IRIPPPRPKR KPTHPYPRKL GNSPGKGAPY RKLLDKPQLQ VVPSSYEQEN DSPKSVLTRA  180
QVVRSPASSV GAEDRCSAQR IAAVEVATQL PPYKVYNGDS VSKHSNCGIP ESPVLRLFGK  240
RVVVNGLHQQ PNLDPGNQQN VADMELDASA ETSTTGTEKL SSCGAAEANT LSPYPTDKHQ  300
FMYYLPQGKV LFVPSDCQFF SYNNGSMDCT VSNPQAKQQQ NQPSQAADCR FRSGEGSCTE  360
SITTSSSVPE TPTQNSESVD SVQVLAYNEE DEVIPVPGSR KYVNPNPDSL RGFVPYKYNA  420
EREMVQSQTD EVQADREMTR LCL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03837.1.g00020.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824173.1	1e-172	uncharacterized protein LOC112899782
TrEMBL	A0A2S3I9P7	1e-170	A0A2S3I9P7_9POAL; Uncharacterized protein
STRING	Si010077m	1e-168	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-33	MYB_related family protein