PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03833.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 591aa    MW: 65463.2 Da    PI: 8.9454
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03833.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.83.1e-09178211137
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++g
  Zpz_sc03833.1.g00040.1.am.mk 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYG 211
                                   89****99**********99966...3.6********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-1550149IPR001471AP2/ERF domain
PROSITE profilePS5103215.85750143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-95072IPR001471AP2/ERF domain
PRINTSPR003672.4E-55162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-9107145IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-7113145IPR016177DNA-binding domain
PRINTSPR003672.4E-5125145IPR001471AP2/ERF domain
PfamPF008474.8E-5178211IPR001471AP2/ERF domain
CDDcd000185.28E-17178262No hitNo description
SuperFamilySSF541716.02E-5178211IPR016177DNA-binding domain
SMARTSM003807.2E-16179266IPR001471AP2/ERF domain
PROSITE profilePS5103213.88179260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-4179211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-6234261IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-5234262IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MARPRKTSAA ANSTSNNAAV GDVDVRVKPK PRKRTRKSVP RESPSQRSSI YRGVTRHRWT  60
GRFEAHLWDK NSWSETQNKK GKQGQSLLRE LEAIILQTGC LRTAGCFGPG RDHGAYDDED  120
AAARAYDLAA LKYWGPDTIL NFPASAYEEE LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY  180
RGVARHHHNG RWEARIGRVF GNKYLYLGTY GAPIPLSKHS TRHLRCNAGL FVSATQEEAA  240
MAYDMAAIEY RGLNAVTNFD LSRYIKWLRR GGADSASFPA SAQNPQELPP AADIDGVAFH  300
PDDHHRGSER TEARFQLPAR ASLGHAPTTS ALRLLLQSPK FKEMIARTAE AEAESSTTSS  360
SSSPSPPPPS PPQQQELQAQ VAKDGGGWAS PQCSFPDDIQ TFFGCEDVAG AGVGLGYADV  420
DGLFFGDLAA YSSPAFHFEL DFLCILCDRL GEFGRFQPFD HRSYTQPDRT EYAASEGLAL  480
PVCERNFVVL VQDDRTLSRS LSAKNMWPQV EWPVGIVDPD AGAVYPVQRY VHTTAADRRW  540
CVCAPATRRD GRWGGRRDLA GRCRRLAGWL FAASLQLATT NIREHRRSVS C
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03833.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396321e-108BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551111e-108BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankBT0699101e-108BT069910.1 Zea mays full-length cDNA clone ZM_BFb0327D19 mRNA, complete cds.
GenBankKJ7275881e-108KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-165PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9XDV91e-170A0A0D9XDV9_9ORYZ; Uncharacterized protein
STRINGLPERR09G07570.11e-170(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-74ARIA-interacting double AP2 domain protein