PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03811.1.g00060.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 261aa MW: 28241.9 Da PI: 6.7998 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.7 | 5.2e-35 | 111 | 220 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......ea 75 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai e+++ + +a + e+ Zpz_sc03811.1.g00060.1.am.mk 111 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEEIPDRPEAAAAAEaaaeatEQ 191 689**************************************************************5444411111211122 PP TCP 76 esssssasnsssg....................k 89 ++++ s+ + + Zpz_sc03811.1.g00060.1.am.mk 192 GEQVPST-----SygfsnpggaitavaggsfvqH 220 2222222.....1334455655655555555532 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.4E-32 | 113 | 213 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.957 | 114 | 172 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MASRVSFRAE QDFKLEEDKN QLSEGLDPWS NNPTATTSTL HYLLQEKERA QAQEQLQIYH 60 HQGFSYLEHH RRQQQNQSTG GAGCDGLSSG ESTPVDALTT AFGSGRIVRS AAGRKDRHSK 120 VCTARGLRDR RVRLAAHTAI RFYDVQDRLG YDRPSKAVDW LIRNAKAAIE EIPDRPEAAA 180 AAEAAAEATE QGEQVPSTSY GFSNPGGAIT AVAGGSFVQH SGADGVKSLF PSSSTASTTP 240 AHDEYRGSPP DLLSRTTSSQ P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 119 | 173 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 119 | 173 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03811.1.g00060.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972119 | 1e-158 | EU972119.1 Zea mays clone 375445 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972181.1 | 1e-143 | transcription factor PCF7 | ||||
Swissprot | A2WV68 | 7e-97 | PCF7_ORYSI; Transcription factor PCF7 | ||||
Swissprot | Q8LT05 | 7e-97 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | A0A368RB94 | 1e-142 | A0A368RB94_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb03208.1.p | 1e-132 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 5e-30 | TCP family protein |