PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03809.1.g00040.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 409aa MW: 43870.8 Da PI: 11.0347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03809.1.g00040.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.2e-06	368	393	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Zpz_sc03809.1.g00040.1.sm.mkhc 368 SIAERERRTRISEKLRKLQELVPNmD 393 689********************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.559	362	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-6	365	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.75E-4	366	399	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-5	367	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MPASFHLQRG TSDPTSLVEP GGSPRRATRP ENQSRAIALP QSLSFAPSPA RLGSFKPTTR 60 PRSSHLRQQP PPPQPNLPCF YASRAHQQPK LTSSRPGAHR ARLPGRRLVN FTPAQRPEGA 120 VGMRRFMPGS GGVEPSSSPS SGGQQRHHQH GERGGDTAAA GGLRYGGGDI SLGHGHDGRL 180 PQLGVDSAGR NEDRQQDGSM DMLARHSSSP VGFFSNLVMD NGYPSSKGAG GSGAEPHHHP 240 SKASNVNSWK MNFTRQQQQQ GAASGHLSQI SELDGGAFPP GLSAGGRSSG ESSGAASRSF 300 SGGFSIVGPW EESREITATL GAYDPQFSGA MAGSALEMAG MDRYLQLQQD QVPFKVRAKR 360 GCATHPRSIA ERERRTRISE KLRKLQELVP NMDKTLKHEQ EKCTCCRKR

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MPASFHLQRG TSDPTSLVEP GGSPRRATRP ENQSRAIALP QSLSFAPSPA RLGSFKPTTR  60
PRSSHLRQQP PPPQPNLPCF YASRAHQQPK LTSSRPGAHR ARLPGRRLVN FTPAQRPEGA  120
VGMRRFMPGS GGVEPSSSPS SGGQQRHHQH GERGGDTAAA GGLRYGGGDI SLGHGHDGRL  180
PQLGVDSAGR NEDRQQDGSM DMLARHSSSP VGFFSNLVMD NGYPSSKGAG GSGAEPHHHP  240
SKASNVNSWK MNFTRQQQQQ GAASGHLSQI SELDGGAFPP GLSAGGRSSG ESSGAASRSF  300
SGGFSIVGPW EESREITATL GAYDPQFSGA MAGSALEMAG MDRYLQLQQD QVPFKVRAKR  360
GCATHPRSIA ERERRTRISE KLRKLQELVP NMDKTLKHEQ EKCTCCRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03809.1.g00040.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954725	1e-105	EU954725.1 Zea mays clone 1479278 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808991.1	1e-104	transcription factor bHLH128-like
TrEMBL	A0A1E5USQ6	1e-106	A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRING	Pavir.Aa01423.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	8e-26	bHLH family protein