PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03802.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23155.7 Da PI: 5.2026 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4.1e-07 | 4 | 51 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT E + + a + + ++ +W+ +art+g g+t ++ ++ k+ Zpz_sc03802.1.g00010.1.am.mk 4 SWTVKENKVFETALATFDKDtpdRWENVARTVGGGKTVDDVERHYAKL 51 7********************************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.6E-4 | 1 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 9.57 | 1 | 56 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.04E-9 | 3 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSSSWTVKEN KVFETALATF DKDTPDRWEN VARTVGGGKT VDDVERHYAK LIQDLREMEA 60 EGLMGSLFAD GGGSSKDDEE QRWLRSSGTC DCCRDKNAKP SVVPKRLFGG ERFCCVTAGA 120 SIVADVYTRP HKGSQRPDGE ADVDHQCRSG TQGVEVEAES LRRHQAEGQR GAMGAIIGQG 180 GGVMQVIIGW KVRWLEWRDE YGDEVDKQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-17 | 5 | 81 | 11 | 86 | RADIALIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03802.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 7e-20 | RAD-like 1 |