PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03784.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 969aa    MW: 105085 Da    PI: 10.7152
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03784.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.7e-19887921135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Zpz_sc03784.1.g00050.1.am.mk 887 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 921
                                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-18881935IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.295881917IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-14884944No hitNo description
Gene3DG3DSA:3.30.50.105.4E-15885919IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.74E-13886943No hitNo description
PfamPF003208.1E-17887921IPR000679Zinc finger, GATA-type
PROSITE patternPS003440887912IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MSFGRNPWLD AGFHTPLARW SSRPVPHDNG SLPRSTFEQK AWFWAIWLVF PRTREQEEET  60
PVSCEVDSRH RTPVTKLRGQ EIQTIIVVTV MGHADVWLVL RGVHAIRVPF GSRSLGPTLK  120
MNNGAAPTGM SVRAHRHLRR DRTICVVWVR RSESSARGTI TARPVPVRGE QHPDLAGARR  180
LETREHLDGQ RIDDGQGIDD TVEPLGGCSA PFLETAHHRH GVVPLPPRLD PSRQQRHGHA  240
ASHRHRAHRR HVQSLPTPHQ SLLPAHEMGS SPLAAATENR SLGIDANAPR PLASRDMLVH  300
PSRWMWMRRC FPLFEVQTTI PAPSSRVTPL ALETAAGWGA GGGIDEVRNC AVTACRGGDI  360
IRQRRWLNKR RRLPGKDKTT PSPSLHGDYV KTALEETEEP QLCPFLGLNV GRQQGQGAVP  420
PSLVGAAVLV TSLAGPGQIR RHNAQARARE CRQDWCQVAH HAKASTRAAS GDLSLPGMVS  480
REVDSVRHQR LTPATRRALP APQRQRINRT RHPARGATSS ARPMTPSARA HATNRAANRR  540
SEDAPAGKVP RQNNLRNGTR SSLPPLLPTS SLPPAPFHPL LLYVRLLQPC SSAAALAMAL  600
FLAHHHGSLV ETEGRMGALR SSLLPCQVAE EVAAAGAAGP AAWCAGERGV GLFAEGFSVE  660
DLLDLEELCE VDKDVAAELG EAAPSSAVEE DKSSDSHGSS SVVSYELMPL PPPVIDLPAH  720
DAEELEWVSR IMDDSLAELP PASSFALRRQ QEPAVSRMVP VPTPTICALS TEALVPVKAK  780
RSKRSRGSVW SLSGAAPLSD STSSSSTTTT SSCSSSSASF PPLLLLDSSP FAAAHLLEQA  840
PRSKKSKHGK NGKSKLKKRG RKPKHQQPSQ FSGADATAPV ASGDRRCSHC GVQKTPQWRA  900
GPEGAKTLCN ACGVRYKSGR LLPEYRPACS PTFVSSIHSN SHRKVLEMRR KKEGLPLVPA  960
ASTPAVTSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368372KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03784.1.g00050.1.am.mk
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-38GATA transcription factor 5